Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------MTEQAISF--AKDFLAGGIAAAISKTAVAPI--------ERVKLLLQVQHASKQIAADKQYKG--IVDCIVRIPKEQGVLSFWRGNLANVIRYF--------------PTQALNFAFKDKY-----KQIFLGGVDKHTQFWRYFAGN-----------LASGGA--------------AGATSLCFV--YPLDFARTRLAADVGKSGTEREFRG--------LGDCLVKITKSDG-IRGLYQGFSVSVQGIIIYR-------------AAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVT------AVAGVVSYPFDTVRRRMMMQSGRKGADIMYT-----------GTVDCWRKIFR--------DEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI---- |
| 4J1Q Chain:A ((20-445)) | HMERLMLEPVWEKQNEELSYTEHIIVLFETERSVTDSIASHMKDARVITLNEAVGHIAERYQCYMQNIFELLQSKVRKLSAGRIIIQAIVPLEKEKQLFAGVSGLFKTAEIEFSKLTAQVIEIEKPEEMIDLHLKLKDDSRRPFDKQIRYEAGYRFVKGWREMVDTLHMPWRDEGVYLITGGAGSLGLLFAKEIANRTGRSTIVLTGRSVLSEDKENELEALRSIGAEVVYREADVSDQHAVRHLLEEIKERYGTLNGIIHGAGSSKDRFIIHKTNEEFQEVLQPKVSGLLHVDECSKDF---PLDFFIFFSSVSGCLGNAGQADYAAANSFMDAFAEYRRSLAASKKRFGSTISFNWPLWEEGGMQVGAEDEKRMLKTTGMVPMPTDSGLKAFYQGIVSD------KPQVFVMEGQLQKMKQKLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J1Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137724 for 1964 contacts (-70.1/contact) +
2D Compatibility (PS) -30828 + (NN) -8825 + (LL) 292
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -192635.0 ( -98.08 by residue)
QMean score : 0.243
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