Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNHHYKH-LGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAG--MTAVICTYPLDMVRVRLAFQVKGEHSYTGIIHAFK-TIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVA--GAIAQTISYPFDVTRRRMQLGTV-LPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN |
| 3PVT Chain:A ((1-304)) | MRSTQEERFEQRIAQETAIEPQDWMP--DAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGC----------AREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNS------------PNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVIN---------GRGICNQERLDAKRKAWEEGTWVREAALAHAQK-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131776 for 2246 contacts (-58.7/contact) +
2D Compatibility (PS) -29366 + (NN) -2802 + (LL) 3020
1D Compatibility (HY) -1600 + (ID) 2200
Total energy: -164724.0 ( -73.34 by residue)
QMean score : 0.279
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