Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFSSVAHLARANPFNTPHLQLVHDGLGDLRSSSPGPTGQPRRPRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGFYEVFKVLYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYK--EEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGLTQ |
2B4L Chain:A ((1-268)) | ---------------DENASAAEQVNKTIIGIDPGS------GIMSLTDKAMKDYDLN---------------------------------DWTLISASSAAMTATLKKSYDRKK-PIIITGWTPHW----MFSRYKLKYLDDPKQSYGS--AEEIHTITRKGFSKEQPNAAKLLSQFKWTQDEMGEIMIKVEEG--EKPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAYVAWDSEIASTNVIGKVLEDL---------GYEVTLTQVEAGPMWTAIATGSADASLSAWLP---NTHKAYAAKYKGKYDDIGTSMT----------------GVKMGLVVP-----QYMKNVNSIEDLKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2B4L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141964 for 2250 contacts (-63.1/contact) +
2D Compatibility (PS) -28064 + (NN) -5287 + (LL) 5108
1D Compatibility (HY) -4400 + (ID) 1800
Total energy: -176407.0 ( -78.40 by residue)
QMean score : 0.256
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