Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQFLMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYKHQGMFQALTEIGQKHG---LVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMSGIAVVLAMAPFDVACTRLYNQPTDAQGKGLMYRGILDALLQTARTEGIFGMYKGIGASYFRLGPHTILSLFFWDQLRSLYYTDTK- |
| 4S1B Chain:A ((5-220)) | ------------------------HPLLKKILMKAPGTYHH---SMMVANLAEACADKIGANSLLVRVGCFYH-----------DIGKTLRPPYFVENQINPHDRLTPEQSRDIILSHTKDGAEILKENHMPQPIIDIALQH-----------------HGTTLLKYFYFKAKETNPDV----KEADYRYSGPK----------PQTKEIAIINISDSVEAAVRSS-----------TEPTMAKITEIIDGIIKDRFLD--------GQFTECDIT---IQEIKIIRDTLIATLNGIYHQRIQY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4S1B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119118 for 1673 contacts (-71.2/contact) +
2D Compatibility (PS) -21705 + (NN) -6572 + (LL) 7084
1D Compatibility (HY) -5200 + (ID) 2000
Total energy: -147511.0 ( -88.17 by residue)
QMean score : 0.306
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