Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MAFLMHLLVCVFGMGSWVTI-NGLW-VELP-------LLVMELPEGWYLPS---YLTVVIQLANIG--PLLVTLLHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVT-FLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTL-HSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA |
| 4RAP Chain:A ((10-391)) | ITPPDTPTQAGPENIFYDFNDGARVLLPEGKWHVRLLDADSENILFCCDVDKGWVTSSKKYFVRFRIQVFRQGATPLLDETLK------LKDRPVLISF-PTGT-----------------LGDLLGWFPYAERFQSLHKCRLECTMSQDIIDLLAPQYPQIQFSTPDKPRTVAPY--------ATYRVGLYFGGDTNNQPVDFRKVGFHRSAGYILGVDPREAPVRLDLSAPRVIAA---PYVCIATQST----CQAKYW---NNGTGWSEVIAHLKSLGYRVMCIDR-------------DAHYGQGF-----------------------------------VWNHIPWGAEDFTGKLPLQERVNLLR---------HASFFIGLPSGLSWLAWATRIPVVLISGFSLPNSEFYTPWRVFNSHGCY-GCWDDTSL-------NFDHHDFLWCPRHKNTDRQFECTRLITGAQVNGVINKLHRSLT---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -410038 for 2896 contacts (-141.6/contact) +
2D Compatibility (PS) -37450 + (NN) -700 + (LL) 8728
1D Compatibility (HY) -10400 + (ID) 3450
Total energy: -453310.0 ( -156.53 by residue)
QMean score : 0.226
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