Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGPRIGPAGEVPQVPDKETKATMGTENTPGGKASPDPQDVRPSVFHNIKLFVLCHSLLQLAQLMISGYLKSSISTVEKRFGLSSQTSGLLASFNEVGNTALIVFVSYFGSRVHRPRMIGYGAILVALAGLLMTLPHFISEPYRYDNTSPEDMPQDFKASLCLPTTSAPASAPSNGNCSSYTETQHLSVVGIMFVAQTLLGVG-GVPIQPFGISYIDDFAHNSNSPLYLGILFAVTMMGPGLAFGLGSLMLRLYVDINQMPEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQFRRKVLAVTDSPARKGKDSPSKQSPGESTKKQDGLVQIAPNLTVIQFIKVFPRVLLQTLRHPIFLLVVLSQVCLSSMAAGMAIFLPKFLERQF-SITASYANLLIGCLSFPSVIVGIVVGGVLVKRLHLGPVGCGALCLLGMLLCLFFSLPLFFIGCSSHQIAGITHQTSAHPGLELSPSCMEACSCPLDGFNPVCDPSTRVEYITPCHAGCSSWVVQDALD--NSQVFYTNCSCVVEGNPVLAGSCDSTCSHLVVPFLLLVSLGSALACLTHTPSFMLILRGVKKEDKTLAVGIQFMFLRILAWMPSPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFFFKTGSVICFALVLAVLRQQDKEARTKESRSSPAVEQQLLVSGPGKKPEDSRV |
| 4U1F Chain:A ((17-496)) | --------------PSSSLKSWLMDDKVRDQFVLQD--DVKTSVFWN-------------------SMFNEEDSLVESRENWSTN----YVRFSPKGTY----LFSY-----HQQGVTAWGG------PNFDRLRRFYHPDVRNSSVSPNE-------KYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDK--------YCARMVGD-------------------------SLIVHD-----ATKNFMPLEAKALKPSGIRDFSFAPE---------------GVKLQPFRNGDEPSVLLAYWTPETNNSAC--------TATIAEVPRGRVLKTVN-----LVQVSNVTLHWQ--NQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNR------------------FVTISVHEVADMNYAI----------------------------PANTIRFYAPETKKRWSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDY-----------------------PGEKNINDNNDVSASL----------KDVAHPTYSAATNITWDPS-GRY--VTAWSSSLKHKVEHGYKIFNIAGN----------LVKEDIIAGFKNFAWRP-------------RP----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4U1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -164642 for 3478 contacts (-47.3/contact) +
2D Compatibility (PS) -49212 + (NN) -5370 + (LL) 19388
1D Compatibility (HY) -14000 + (ID) 5400
Total energy: -219236.0 ( -63.04 by residue)
QMean score : 0.126
|
|
|