Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRPVFILGIILLLVGCKQRDERVLMVDEQGSFAVGGTVLV-DSLGHTFHGDHAYVFYQKPVGARKYPLVFAHGVGQFSKTWETTPDGREGFQNIFLRRRFCVYLVDQPRRGNAGRGTESVTISPAFDEEVWFNRFRVGIWPDYFEGVQFKRDKETLDQYFRQMTPTIGTTDFEVYSDAYAALFDKIG--PGVFITHSQGGPVGWNTLLK-TRNIKAIASYEPGGAVPFPEGQLPEE-------------------------AKFITLSK-------------------------KMEGIEVPMSVFMEYTKVPIVIYYGDNLPETDERPELYEWTRRLRLMKIWAKMLNDQGGDVTVIHLPEVGLHGNTHFPMSDLNNIEVADLLSEWLHTKALD |
| 1U2E Chain:A ((4-289)) | --------------------YQPQTEAA------TSRFLNVEEAGKTLRI--HFNDC----GQGDETVVLLHGSGPGATGWANF----SRNIDPLVEAGYRVILLDCPGWGKSDS-------------------------------------------------VVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVP---------------MDAGLRLLSGIAGSELHIFRDCG-----HWAQWEH-ADAFNQLVLNFLARP--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118395 for 2017 contacts (-58.7/contact) +
2D Compatibility (PS) -25285 + (NN) -12926 + (LL) 7388
1D Compatibility (HY) -2000 + (ID) 1650
Total energy: -152868.0 ( -75.79 by residue)
QMean score : 0.274
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