Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MKK-RVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGD--KVDLIIQNKSTHADKRTAEGTMAA--------FFSNHKVGSFNVNHQGKRDESGFVI----GILMTANGNFRVNCFFRKVQN--KYVIHQIRIDKTDE
3ZC4 Chain:A ((8-164))
PVAETISKRFWTLIKMLRFYVVLRRFGYIDPLIYSIDPKQIKDVLSEAL-REFVSYTSSSSSRSIVIYDDPKNPVTAQAPCLVVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVNDKYATLITPN-ESVIKEFFDKLDSNIQYARVLASLAVGGE
General information:
TITO was launched using:
RESULT:
Template:
3ZC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30743 for 883 contacts (-34.8/contact) +
2D Compatibility (PS) -12692 + (NN) 2027 + (LL) -200
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -49508.0 ( -56.07 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_3ZC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZC4-query.scw
PDB file :
Tito_Scwrl_3ZC4.pdb
: