Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------MKKNSLYIISSLFFACVLFVYATATNFQNSTSARQVKTETYTNTVTNVPIDIRYNSDKYFISGFASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGVGTIEVPLSIEDLPNGLTAVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQ--IENVMVSDKEVSITSDQETLDRIDKIIAVLPTSERITGNYSGSVPLQAIDRNGVVLPAVI----TPFDTIMKVTTKPVAPSSSTSNSSTSSSSETSS----STKATSSKTN------ |
| 1Y08 Chain:A ((33-323)) | TSVWTKGVTPPANFTQGEDVFHAPYVANQGWYDITKTFNGKDDLLSGAATAGNMLHWWFDQNKDQIKRYLEEHPEKQKINFNGEQMFDV-KEAIDTKNH---------------QLDSKLFEYFKEKAFPYLK-----HLGVFPDHVIDMFINGYRLSLTNHGPTPV---------KEGSKDPRGGIFDAVFTRGDQSKLLTSRHDFKEKNLKEISDLIKKELTEGKALGLSHTYRINHVINLWGADFDSNGNLKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISAKEIKEDNIGAQVLGLFTLSTGQDSWNQTN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y08.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 46052 for 1753 contacts (26.3/contact) +
2D Compatibility (PS) -23907 + (NN) -1477 + (LL) 2520
1D Compatibility (HY) 3600 + (ID) 1100
Total energy: 25688.0 ( 14.65 by residue)
QMean score : 0.126
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