Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKMEKKWPFVFNGIVIFCLILLILGMRWQAKKEESEVLNVTESLQKESEITSFSEEEEAVLYMLSALKKND-LDM-ALRGCAIDETALQINFVKTAEELPGMQLIDLPAPTSDYSYYFPLTSAEMTKAYIEQFEELSTEIPEIETLEVLEIAEKKE-K-EREEQLAECLAAQ-EVSELEIYVKCGEQSYRLGFTAVQYEKNWKIHSLKEGLLYETDIPACVQMEEMR-EAKKT-YVLPNQ-LTGANYFQAMPISEKTPQRAVEQFIYAIEKGDLTRALAFATTESSQDTSPELLKKQGEYAKELKTMLYGFLGTEDARLYGKSEEQLNKLRGKLNPEYMVYLDLIKVIPIETEENTETVKQYAGLYSYNGKNYLTGYTLCRQEDGWQIQSLSAPALSLE-SGEVMRLSKEESRKTSE-------QSVLKAEKNER- |
| 3DSM Chain:A ((1-327)) | -----------ASGLFITN----------EGNFQYS---NATLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS--PRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMES------GSTEQMVQYGKYVYVNC--WSYQ--------NRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP------------SLYRIDAETFTVEKQFKF-------------KLGDWP---------------------SEVQLNGTRDTL---YWINNDIWR--PVEADRVPVRP-----FLEFRDTKY-YGLTV-NPNNG---EVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 45045 for 2449 contacts (18.4/contact) +
2D Compatibility (PS) -30963 + (NN) 14599 + (LL) 9224
1D Compatibility (HY) -6800 + (ID) 2850
Total energy: 28255.0 ( 11.54 by residue)
QMean score : 0.053
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