Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------MLILISPAKTLDYQSPLTTTRY-----TLP--------ELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPDFTP--ANARQAILAFK-GDVYTGLQAETFSEDDF--DFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLY----------QFWGDIITNKLNEALAAQGDNVVI--------NLASDEYFKSVKP---KKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLM---------SRFIIENRLTKPEQLTGFNSEG----YFFDEDSSSNGELVFKRYEQR----------------------------------------------- |
| 2VDU Chain:B ((2-436)) | SVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS-IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39290 for 1765 contacts (-22.3/contact) +
2D Compatibility (PS) -26609 + (NN) 6773 + (LL) -172
1D Compatibility (HY) -10800 + (ID) 2350
Total energy: -72448.0 ( -41.05 by residue)
QMean score : 0.116
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