Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTVPAGVDDYSYLVAADDQDGTIIFFK--AEGQ----TVIIKYTSQRNTKLKAKALTLSQLKKEFYQTRSQKREVDDYVAGLRTE
1FNF Chain:? ((1142-1235))
PLSPPTNLHLEANPDTGVLTVS----WERSTTPDITGYRITTTPTN----GQQGNSLEEVVHADQSSCT-FDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23824 for 513 contacts (-46.4/contact) +
2D Compatibility (PS) -8702 + (NN) -774 + (LL) 2604
1D Compatibility (HY) 1200 + (ID) 350
Total energy: -29846.0 ( -58.18 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: