Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKL------LLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS-FWRGNLANVIRYF------PTQA----LNFAFKDKYKQIFL------GGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLA----ADVGKSGTEREFR-----------------------GLGDCLVKITKSDGIRGLYQGFSVSVQGII---IYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSY--------PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSN--------VLRGMGGAFVLVLYDELKKVI----------- |
| 1CJD Chain:A ((15-383)) | -LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLT--PNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLD------PKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97157 for 1957 contacts (-49.6/contact) +
2D Compatibility (PS) -30151 + (NN) 5357 + (LL) 428
1D Compatibility (HY) -8000 + (ID) 2800
Total energy: -132323.0 ( -67.62 by residue)
QMean score : 0.090
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