Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQAGFPLGILLLFWVSYVTDFSLVLLIKGGALSGTDTYQSLVNKTFGF--PGYLLLSVLQFLYPFIAMISYNIIAGDTLSKVFQRIPGVD-------------PENVFIGRHFIIGLSTVTFTLPLSLYRNIAK------LGKVSLISTG----------LTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAIQAV--GVMSFAFICH-HNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDLFENYCRNDDLVTF-GRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRT-HSDKIMSCVMLPIGAVVMVFGFVMAITNTQDCTHGQEMFYCFPDNFSLTNTSESHVQQTTQLSTLNISIFQ |
| 1CVR Chain:A ((1-432)) | YTPVEEKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLVNYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDV-------ACVNGDFLF-SMPCFAEALMRAQKDGKPTGTVAIIASTIDQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGENMLDTWTVFGDPSLLVRTLVPTEMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAI--VKDGKAIIKLNESIADETNLTLTVVGYNKVTVIKDVKVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CVR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -337727 for 3420 contacts (-98.8/contact) +
2D Compatibility (PS) -41369 + (NN) -3828 + (LL) 1116
1D Compatibility (HY) 2800 + (ID) 2150
Total energy: -381158.0 ( -111.45 by residue)
QMean score : 0.226
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