Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMVVIHPDPGRELSPEEAHRAGLIDWNMFVKLRS-QECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAHYDRYVNKDMSIQELAVLVSGQK
1LM5 Chain:A ((2620-2689))
----------AAIFDTENLEKISITEGIERGIVDSITGQRLLEAQAC-------------TGGIIHPTTGQKLSLQDAVSQGVIDQDMATRLK-----------------
General information:
TITO was launched using:
RESULT:
Template:
1LM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7540 for 491 contacts (-15.4/contact) +
2D Compatibility (PS) -7338 + (NN) -2171 + (LL) 1956
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -17393.0 ( -35.42 by residue)
QMean score : 0.195
(partial model without unconserved sides chains):
PDB file :
Tito_1LM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LM5-query.scw
PDB file :
Tito_Scwrl_1LM5.pdb
: