Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTNKIIFIVFIVIFIGLSYRHFTNTDKARMEISSLSSIDVFKFNSFSKFSNDKIGVIYD---EEKLSKFKVIMNSLDTSEG-IKKIEVPKDANIESFKYSYHIQPNLKYVEDNNVYDGYFLLYILVGDSEGKSYIIFSGTELSYVLDKNNTNILKEIFLNVKKQQ
1FNF Chain:? ((1142-1235))
-----------------------------------PLSPPTNLHLEANP--DTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQS------SCTFD-NL---SPGLEY--NVSVYTVKDDKESVPISDTIIPA------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46477 for 629 contacts (-73.9/contact) +
2D Compatibility (PS) -9933 + (NN) -4610 + (LL) 6136
1D Compatibility (HY) -800 + (ID) 650
Total energy: -56334.0 ( -89.56 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: