Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNEQ------VAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPD---NEFRVVLARRGQHWVSAVRVGNDITVDD---VTVSDSASIAALVMDGLESIHHADPAA----------INAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQ------ALSDP-------AAEVAVYARQYRDDAKG------PSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV--------------------- |
| 1LWD Chain:A ((1-413)) | ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKS--SGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17261 for 2047 contacts (-8.4/contact) +
2D Compatibility (PS) -31074 + (NN) 4247 + (LL) 224
1D Compatibility (HY) -800 + (ID) 2000
Total energy: -46664.0 ( -22.80 by residue)
QMean score : 0.051
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