Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | QDTFIAAVYEHAAILPNATLTPVSREEALALMNRNLDILEGAITSAADQGAHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNNRNRFGQTPVQERLSCLAKNNSIYVVANIGDKKPCDTSDPQCPPDGRYQYNTDVVFDSQGKLVARYHKQNLFMGENQFNVPKEPEIVTFNTTFGSFGIFTCFDILFHDPAVTLVKDFHVDTIVFPTAWMNVLPHLSAVEFHSAWAMGMRVNFLASNIHYP----SKK-MTGSGIYAPNSSRAFHYDMKTEEGKLLLSQLDSHPSHSAVVNWTSYASSIEALSSGNKEFKGTVFFDEFTFVKLTGVAGNYTVCQKDLCCHLSYKMSENIPNEVYALGAFDGLHTVEGRYYLQICTLLKCKTTNLNTCGDSAETASTRFEMFSLSGTFGTQYVFPEVLLSENQLAPGEFQVSTDGRLFSLKPTSGPVLTVTLFGRLYEKDWASNASSG |
| 2VHH Chain:A ((93-346)) | ------------------------------QREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF--------------------EFAEEA--ENGPTTKMLAELAKAYNMVIIHSILERDM--------EHGE-TIWNTAVVISNSGRYLGKHRKNHIPR------MEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMF-GLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFP---FYGSSYVAAPDGSRTPS--LSRDKDGLLVVELDLN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VHH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -106934 for 1719 contacts (-62.2/contact) +
2D Compatibility (PS) -23030 + (NN) -10743 + (LL) 14500
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -134557.0 ( -78.28 by residue)
QMean score : 0.168
|
|
|