Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GEGVSYSDGHFLTKSGGVINFRKTRVT---SITIT--------ILGNYGLRVV--NGELQNTPLTFKGADFKSSTLKDELLIPLEGA-------VQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVTVHPFLSLTA
1FNF Chain:? ((1142-1235))
-------------PLSPPTNLHLEANPDTGVLTVSWERSTTPDITG-YRITTTPTNGQQGNSLEEVVHADQSSCTFDN--LSP--GLEYNVSVYTVKDDKESVPISDTIIPA-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26250 for 414 contacts (-63.4/contact) +
2D Compatibility (PS) -8093 + (NN) -671 + (LL) 5444
1D Compatibility (HY) 1600 + (ID) 850
Total energy: -28820.0 ( -69.61 by residue)
QMean score : 0.050
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: