Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFLAILDLKSLVLNAINYWGPKNNNGIQGGDFGYPISEKQIDTSIITSTHPRLIPHDLTIPQNLETIFTTTQVLTNNTDLQQSQTVSFAKKTTTTTSTSTTNGWTEGGKISDTLEEKVSVSIPF---IGEGGGKNSTTIEANFAHNSSTTTFQQASTDIEWNIS--QPVLVPPRKQVV----ATLVIMGGNFTIPMDLMTTIDSTEHYSGYPILTWISSPDNSYNGPFMSWYFANWPNLPSGFGPLNSDNTVTYTGSVVSQVSAGVYATVRFDQYDIHNLRTIEKTWYARHATLHNGKKISINNVTEMAPTSPIKTN |
| 3W4S Chain:A ((1-273)) | ---MKCLVVGHVVRDIVKK--GNKVLERLGG--------------------------GAYYSALALSRFCDVEILTSFSNLPEEWIKELESMAKLQVVPSETT-TTYELTYLDGNRRRLKLLERASPIEELPDGEYDVLLMNPVAREVPPALVTSALKKFPFVAVDIQGFIRSSSPGEIQYQPIDGSFLKGVKILHADLGEYQYLQGFSPEFVDVLLLSN------GPEPGKAFLHGREYTFEPVHVGVDES---TG--AGDVFLGAFTGFYSQCPFVQALKRA--AAFTALFLKNRSVDFSMDDVNELAMKVEVKRV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W4S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18709 for 2250 contacts (-8.3/contact) +
2D Compatibility (PS) -27438 + (NN) -1154 + (LL) 1936
1D Compatibility (HY) -4000 + (ID) 1700
Total energy: -51065.0 ( -22.70 by residue)
QMean score : 0.211
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