Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------GALTTSTRQGSRVVGFMD--FIIALGWQIIPSNIRYIYILNCSQFMPTSDVTTIYFQADSG-LESIFVMDSP----FYASCTQQLPDKT-IKTYGVTISKKQSIISINFSSSLEPNIMVSAWTASITRTQ
1GMM Chain:A ((4-129))
FSKIESEEYNSLKSSTIQTIGTSDGGSGIGYIESGDYLVFN-KINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWNNYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSN------------------
General information:
TITO was launched using:
RESULT:
Template:
1GMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47585 for 722 contacts (-65.9/contact) +
2D Compatibility (PS) -11629 + (NN) -8412 + (LL) 1788
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -67838.0 ( -93.96 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1GMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMM-query.scw
PDB file :
Tito_Scwrl_1GMM.pdb
: