Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLPDIVNMYFDADSCNDTDALSETFAPDAVVED--EGARHQGVVAILRWWVAAKKAA--SYVAEPLESTVDGDKALVRAKVSGR----FPGSP-------VTLTYSFTIKDGRIARLEIQ---------------------
1SJW Chain:A ((2-143))
SRQTEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEERGPWVKAYLVLYGRHVGRLVGMPPTDRRFSGEQVHLMRIVDGKIRDHRDWPDFQGTLRQLGDPWPDDEGWR
General information:
TITO was launched using:
RESULT:
Template:
1SJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51742 for 732 contacts (-70.7/contact) +
2D Compatibility (PS) -11323 + (NN) -3136 + (LL) 0
1D Compatibility (HY) 1200 + (ID) 1100
Total energy: -66101.0 ( -90.30 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1SJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJW-query.scw
PDB file :
Tito_Scwrl_1SJW.pdb
: