Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------MAKVNRARSTSPPDGGWGWMIVA----GCFLVTICTRAVTRCISIFFVEFQTYFTQDYAQTAWIHS-----------------------------------------IVDCVTMLCAP-LGSVVSNHLSC---QVGIMLGGLLASTGLILSSFATSLKHLYLTL--GVLTGLGFALCYSPAIAMVGKYFSRRKALAYGI----------AMSGSGIGTFI----LAPVVQLLIEQFSWRGALLILGGFVLNLC-------VCGALMRPITLKEDHTTPEQNHVCRTQK--EDIKRVSPYSSLTKEWAQTCLCCCLQ--QEYS-----FLLMSDFVVLAVSVLFMAYGCSPLFVYLV-------PYALSVGVSH--QQAAFLMSILGVIDIIGNITFGWLTDRRCLKNYQYVCYL-FAVGMDGLCYLCLPMLQSLPLLVPFSCTFG------------------------YFDGAYVTLIPVVTTEIVGT-------TSLSSAL--------GVVYFLHAVPYLVS----PPIAGRLVDT--TGSYTAAFLLCGFSMIFSSVLLGFARLIKRMRKTQLQFIAKESDPKLQLWTNGS------------VAYSVARELDQKHGEPVATAVPGYSLT |
| 1K9D Chain:A ((5-679)) | YEPCWLRYERKDQYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDE--EFER-PLEGTLVHPEGYVIRSDVDDGPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQPKNRLRMINHWDNMDGSIERGYAGRSIFFVDDQFVKQNQRIKDYARLLASVGINAISINNVNVHKTETKLITDHFLPDVAEVADIFRTYGIKTFLSINYASPIEIGGLPTADPLDPEVRWWWKETAKRIYQYIPDFGGFVVKA-----PGPFTYGRDHAEGANMLAEALAPFGGLVIWRCFVYNCQQDWRDRTTDRAKAAYDHFKPLDGQFRENVILQIKNGPMDFQVREPVSPLFGAMPKTNQMMEVQITQEYTGQQKHLCFLIPQWKEVLDFDTYAKGKGSEVKKVIDGSLFDYRYSGIAGVSNIGSDPNWTGHTLAQANLYGFGRLAWNPDLSAEEIANEWVVQTFGDDSQVVETISWMLLSSWRIYENYTSPLGVGWMVNPGHHYGPNVDGYEYSHWGTYHYADRDGIGVDRTVATGTGYTAQYFPENAAMYESLDTCPDELLLFFHHVPYTHRLHSGETVIQHIYNTHFEGVEQAKQLRKRWEQLKGKIDEKRYHDVLERLTIQVEHAKEWRDVINTYFYRKSGIDDQYGRKIYR--------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1K9D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -404377 for 3439 contacts (-117.6/contact) +
2D Compatibility (PS) -46610 + (NN) -807 + (LL) 1504
1D Compatibility (HY) -6000 + (ID) 3800
Total energy: -460090.0 ( -133.79 by residue)
QMean score : 0.158
|
|
|