Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCFRTKLSVSWVPLFLLLSRVFSTETDKPSAQDSRSRGSSGQPADLLQVLSAGDHPPHNHSRSLIKTLLEKTGCPRRRNGMQGDCNLCFEPDALLLIAGGNFEDQLREEVVQRVSLLLLYYIIHQEEICSSKLNMSNKEYKFYLHSLLSL-RQDEDSSFLSQNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSS--EGANESTLPQLAAMIITLSLQGVCLGQGNLPS-PDYFTEYIFSSLNRTNTLRLSELDQLLNT-LWTRSTCIKNEKIHQFQRKQNNIITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIF--LQKGLSLISKEDFKQMSPGIIQQLLSCSCHLPKDQQAKLPPTTLEKYGYSTVAVTLLTLG-SMLGTAL-VLFHSCEENYRLILQLFVGLAVG-TLSGDALLHLIPQVLGLHKQEAPEFGHFHESKGHIWKLMGLIGGIHGFFLIEKCFILLVSPNDKQGLSLVNGHVGHSHHLALNSELSDQAGRGKSASTIQLKSPEDSQAAEMPIGSMTASNRKCKAISLLAIMILVGDSLHNFADGLAIGAAFSSSSESGVTTTIAILCHEIPHEMGDFAVLLSSGLSMKTAILMNFISSLTAFMGLYIGLSVSADPCVQDWIFTVTAGMFLYLSLVEMLPEMTHVQTQRPWMMFLLQNFGLILGWLSLLLLAIYEQNIKI |
| 5AFR Chain:A ((8-410)) | -----------------------------------------------------------------------------------------------------LANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLANSTLLIIKQISAIYNAGNLASIITHGVSSVFGQLIKSDIDKTRRKLDDISKQFQQLHTSIETPDLLAMVPSIIKLAVSKGATSHDYANYLPSNDLESMRFLNILQSIANKWFLVLKQTLF-LDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLMDKISQEVMDAILS-NLSYGSFLGLYEKSA-GMIEEWDDIVQDVNLLIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24045 for 1885 contacts (12.8/contact) +
2D Compatibility (PS) -32871 + (NN) 2110 + (LL) 24520
1D Compatibility (HY) -8400 + (ID) 2250
Total energy: 7154.0 ( 3.80 by residue)
QMean score : 0.047
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