Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MVGYDPKPDGRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHE-RLSRSDPSAKYHG---------ILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYS-SLKHLY---KWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLD----LFKKRLQVGGFEHARAAFGQVRR--------------YKGLMDCAKQVLQKEGALGFFK----GLSPSLLKAALSTGFMFFSYEFFCNVFHCMNRTASQR |
| 4TNW Chain:A ((1-342)) | SDSKILAHLFTSGYDFRV--RPPTDNGGPVVVSVNMLLRT--ISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWM---PDTFFPNEKQAYKHTIDKPN-------VLIRIHNDGTVLYSVRISLVLSCP------MYLQYYPMDVQQCSIDLAS----YAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGHHH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4TNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -87180 for 1965 contacts (-44.4/contact) +
2D Compatibility (PS) -30312 + (NN) -6383 + (LL) 1712
1D Compatibility (HY) -16000 + (ID) 3000
Total energy: -141163.0 ( -71.84 by residue)
QMean score : 0.142
|
|
|