Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MVGFKATDVPPTATVKFLGAG------------------TAACIADLIT-----FPLDTAKVRLQIQGESQGPVRATASAQYR-GVMGTIL--------------------------TMVRTEGPRSLYN-GLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHASIG----SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVNAYKTIAREEGFR--GLWKGTSPN----VARNAIVNC---AELVTY--------DL-IKDALLK--ANLMTDDLPCHFTSAFGAGFC-------TTVIASPVDVVKTRYMNSALGQYSSAGHCALTMLQKEG---PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAACTSREAPF |
| 4FDW Chain:A ((21-401)) | ASLEDFSIEQLPAK-TIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDI-FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENV-STIGQE-AFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPANVTQIN----------FSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGWRDFTNKITTF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91208 for 2067 contacts (-44.1/contact) +
2D Compatibility (PS) -29918 + (NN) 7312 + (LL) 1072
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -128342.0 ( -62.09 by residue)
QMean score : 0.159
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