Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPSPAAGGLETTRLVSPRDRGGAGGSLRLKSLFTEPSEPLPEESKPVEMPFHH-CHRDPLPPPGLTPERLHARRQLYAACAVCFVFMAGEVVGGYLAHSLAIMTDAAHLLADVG----SMMGSLFSLWLSTRPATRTMTFGWHR--SETLGALASVVSLWMVTGILLYLAFVRLLHSDYHIEGGAMLLTASIAVCANLLMAFVLHQAGPPHSHGSRGAEYAPLEEGPEEPLPLGNTSVRAAFVHVLGDLLQSFGVLAASILIYFKPQYKAADPISTFLFSICALGSTAPTLRDVLRILMEGTPRNVGFEPVRDTLLSVPGVRATHELHLWALTLTYHVASAHLAIDSTADP-EAVLAEASSRLYSRFGFSSCTLQVEQYQPEMAQCLRCQEPPQA |
| 1JFA Chain:A ((1-354)) | MENFPTEYFLNTTVRLLEY--------IRYRDSNYTREERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQAS----LQTIVGMVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDPYPTMVNYFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYNFGGFPGS-----------HDYPQFLRRMNG--------LGHCVGASLWPKEQFN---ERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQIS---LVKNYVVSDEISLHEALEKLTQDTLHSS--KQMVAVFSDKDPQVMDTIECFMHGYVTWHLCDRRYRLSEIYEKVKEEKTEDAQKFCKFYEQAANVGAVSPSEWAYPPVAQLANV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JFA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201414 for 2813 contacts (-71.6/contact) +
2D Compatibility (PS) -35952 + (NN) -18816 + (LL) 1456
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -266276.0 ( -94.66 by residue)
QMean score : 0.250
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