Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKTVRFGEQAAVPAIGLGTWYMGEHAAQRQQEVAALRAGIDHGLTVIDTAEMYADGGAEEVVGQAIRG---LRDRVVLVSKVYPWHAGKAAMHRACENSLRRLQTDYLDMYLLHWRGDIPLQETVEAMEKLVAEGKIRRWGVSNLDIEDMQALWRTADGEHCATNQVLYHLASRGIEYDLLPWCQQHSLPVMAYCPLAQAGRLRDGLFQHSDIINMANARGITVAQLLLAWVIRHPGVLAIPKAASIEHVVQNAAALDIVLSGEELAQLDRLYPPPQRKNRLDMV
3F7J Chain:A ((7-264))
---DTVKLHNGVEMPWFGLGVFKVENG----NEATESVKAAIKNGYRSIDTAAIYK---NEEGVGIGIKESGVAREELFITSKVWNEDQGYETTLAAFEKSLERLQLDYLDLYLIHWPGKDKYKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDA-EIKPMVNQVEFHPRLTQ--KELRDYCKGQGIQLEAWSPLMQG-----QLLDNEVLTQIAEKHNKSVAQVILRWDLQHG-VVTIPKSIKEHRIIENADIFDFELSQEDMDKIDALNKD----------
General information:
TITO was launched using:
RESULT:
Template:
3F7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205644 for 2207 contacts (-93.2/contact) +
2D Compatibility (PS) -27998 + (NN) -12344 + (LL) 1404
1D Compatibility (HY) -20400 + (ID) 4250
Total energy: -269232.0 ( -121.99 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3F7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F7J-query.scw
PDB file :
Tito_Scwrl_3F7J.pdb
: