Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------GSETTIILTDDG-VTDIGMARNTIHQMV--GL---VDDLVASEATASQLREALYAALARGLGFQASVGQSSPLLLRRSVLLSLRGLARRLARIEADALTDDIQPRDIVLSAKELSEWLQEGDVVTVTIPGGPCTRYRILEGDTSNG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 1VLJ Chain:A ((10-407)) | HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG---------------GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVIT-NEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VLJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15980 for 990 contacts (-16.1/contact) +
2D Compatibility (PS) -13696 + (NN) -9137 + (LL) 1124
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -41539.0 ( -41.96 by residue)
QMean score : 0.180
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