Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH
2YMU Chain:A ((17-220))
-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH
General information:
TITO was launched using:
RESULT:
Template:
2YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61362 for 1699 contacts (-36.1/contact) +
2D Compatibility (PS) -22988 + (NN) -25347 + (LL) -28
1D Compatibility (HY) -20400 + (ID) 10100
Total energy: -140225.0 ( -82.53 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_2YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YMU-query.scw
PDB file :
Tito_Scwrl_2YMU.pdb
: