Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQ--------------HASKQISAEKQYKGIIDCVVRIPKEQGF-----LSFWRGNLANVIRYFPTQ----ALNFAFKDKYKQLFLGGVDRHKQFWRYFAG--------------NLASGGAAGATSLC----------FVYPLDFART--------RLAADVGKGAAQREFHGLGDCIIKIFKSDGL-RGLYQGFNVSVQG---IIIYRAAYFGVYDTAKGM------------------LPDPKNVHIFVSWMIAQSVTAVAGLVSYPFD-TVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWS---NVLRGMGGAFVL--VLYDEIKKYV------------------------------------------- |
| 1YNH Chain:A ((14-452)) | AWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPATQVSVSDTVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YNH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102261 for 2291 contacts (-44.6/contact) +
2D Compatibility (PS) -31308 + (NN) -3637 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -142406.0 ( -62.16 by residue)
QMean score : -0.003
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