Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKL------LLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLS-FWRGNLANVIRYF------PTQA----LNFAFKDKYKQIFL------GGVDKRTQFWLYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV------GKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHIV----ISWMIAQTVTAVAGLTSYPFDTVR----RRMMMQ--------SGRKGTDIMYTGTL------------DCWRKIARDEGGKAFFKGAWSN--------VLRGMGGAFVLVLYDEIKKYT----------- |
| 1CJD Chain:A ((15-383)) | -LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAV-GANPLEAIYQGAGAAD---CEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102760 for 2054 contacts (-50.0/contact) +
2D Compatibility (PS) -30183 + (NN) 5399 + (LL) 452
1D Compatibility (HY) -8000 + (ID) 3100
Total energy: -138192.0 ( -67.28 by residue)
QMean score : 0.109
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