Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------MDFLMSGLAACG--ACVFTNP----------LEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQFLMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYK-HQGMFQALTEIGQKHGLVGLWRGALGGLPR-------VIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMS-------------GIAVVLAMA---PFDVACTRLYNQPTDAQGKGLMY-----RGILDALLQTARTEGIFGMYKGIGASYFRLGPHTILSLFFWDQLRSLYYTDTK---- |
| 2GEK Chain:A ((21-393)) | MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQG----ILRPYHEKIIGRIAVSDLARRWQMEALGSDAVEIPNGVDVASFADAPLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGAGIKVQVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GEK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165498 for 2165 contacts (-76.4/contact) +
2D Compatibility (PS) -31176 + (NN) -3905 + (LL) -108
1D Compatibility (HY) -1600 + (ID) 2050
Total energy: -204337.0 ( -94.38 by residue)
QMean score : 0.186
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