Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAPGGRSEPPQLPEYSCSYMVSRPVYSELAFQQQHERRLQERKTLRESLAKCCSCSRKRAFGVLKTLVPILEWLPKYRVKEWLLSDVISG--VSTGLVATLQGMAYALLAAVPVGYGLYSAFFPILTYFIFGTSRHISVGPFPVVSLMVGSVVLSMAPDEHFLVSSSNGTVLNTTMIDTAARDTARVLI----ASALTLLVGIIQLIFGGLQIGFIVRYL---ADPLVGGFTTAAAFQVLVS----QLKIVLNVSTKNYNGVLSIIYTLVEIFQNIGDTNLADFTAGLLTIVVCMAVKELNDRFRHKIPVPIPIEVIVTIIATAISYGANLEKNYNAGIVKSIPRGFLPPELPPVSLFSEMLAASFSIAVVAYAIAVSVGKVYATKYDYTIDGNQEFIAFGISNIFSGFFSCFVATTALSRTAVQESTGGKTQVAGIISAAIVMIAILALGKLLEPLQKSVLAAVVIANLKGMFMQLCDIPRLWRQNKIDAVIWVFTCIVSIILGLDLGLLAGLIFGLLTVVLRVQFPSWNGLGSIPSTDIYKSTKNYKNIEEPQGVKILRFSSPIFYGNVDGFKKC-IKSTVGFDAIR-VYNKRLKALRKIQKLIKSGQLRATKNGIISDAVSTNNAFEPDEDIEDLEELDIPTKEIEIQVDWNSELPVKVNVPKVPIHSLVLDCGAISFLDVVGVRSLRVIVKEFQRIDVNVYFASLQDYVIEKLEQCGFFDDNIRKDTFFLTVHDAILYLQNQVKSQEGQGSILETITLIQDCKDTLELIET---------ELTEEELDVQDEAMRTLAS------ |
| 4RKN Chain:A ((43-702)) | MQMTKEAREIIAHPKGTKESRGVISLQDYIVEEQAMYDWLFKNHPIFTKY-------GGKTVGKLVVKDRGEEWIEEGRGNDFSKASKRSGGEGFSSMMYRVARNSTLQYPNKFIGPEKCGECHP-AQYETWSRSRHATTIRFP---------------GEHPEVNNK----LNDPVFD---KDTASILPQGITPDVVYCTVGHIRT-----KFGFFDAWLLRGTYHVEGGLLKNGTGQIVAGGNQWQRTWALNLSPEVAKKIKKWVPDFPVTLEEYGDN--GGYVRGLA------------------------------------SYAAKYKKSMSFQASTSYCEVCHPWKFDFKNESEFYAALGNAKELQKHTISKGVSCEECHGAGGHLEGGSGLL---ISNCERCHQRFSYSPDLMRNNPLNA---GKPDLA--LSSKFKSMGP---GCGSEGSQTYFTAHYE----KGMRCATCHDP-----HDVTGNVTGEKGIKGVSYNSEQGYLSSLY----------SKPKLKK----ECTDCHKEQAYIQSKADTHSKNSCASCHMPFMMSCENFYAIQFQDQAGFDTQRRAHIWKIDVDPARKSLVAGSTSKDPRDG-------KDWHFERNEEGRNF-------------VD------------------LMWACARTTWADKDQAEAKGCHSPVVSELKETLHFKD-QKQVYNEVMG---WQTPVKDKFTQVKVGIQGLYSLLEVKKLA-PSDKTRVYELIEKAQDTVDLIEKDGSWGMHGFKYTKQRLDAAVEYINEAQRIMKKSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254717 for 5202 contacts (-49.0/contact) +
2D Compatibility (PS) -63230 + (NN) 15802 + (LL) 12320
1D Compatibility (HY) -3600 + (ID) 5800
Total energy: -299225.0 ( -57.52 by residue)
QMean score : 0.195
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