Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYPQEQDRNYWLLQT
4CT3 Chain:A ((2-165))
----------------AKTQAEINKRLDAYAK----GTVDSPYRVKKATSYDPSFGVMEAGAIDADGY----YHAQQDLITDYVLWL--TDNKVRTW----GNAKDQIKQSYGTGFKIHENKPSTVPKKG-WIAVFTSGSY-EQWGHIGIVYDGGNTS----TFTILEQNWN------GYANKKPTKRVDNYYG-LTHFIEI------PVKA---------
General information:
TITO was launched using:
RESULT:
Template:
4CT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118603 for 1294 contacts (-91.7/contact) +
2D Compatibility (PS) -17324 + (NN) -2662 + (LL) 6024
1D Compatibility (HY) -2400 + (ID) 1800
Total energy: -136765.0 ( -105.69 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_4CT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CT3-query.scw
PDB file :
Tito_Scwrl_4CT3.pdb
: