Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------------MKKRILSLLGVIALFLGVI-------LVSCGNDDDNKNTTGVHKIVVEQSGNTD-DFDLNIAF---GAANTGGVAKLYNENGEYLGDSYLVNKVTENKISCQTGKEGSMMTCAGSVISTSEQAGKKLKIS----------VIAYIDNKEVNRLEK-EYITKGSTLVENFSVSTTSVE----------
4FYM Chain:G ((9-260))
EFLCDEEIYKSFVHLKDKICEERKKKELVSYSSYIKEMKKLLKVVLLKYKALKFRKSNYFFSSGVLNNIVSSNIICFLLSELILKNKLSFDYLLGASYKGIPMVSLTSHFLFESKKYSNIFYLYDRVIVGN----LDDEKKNIIIIDDVFTCGTALTEILAKLKTYEHLKVVAFIVLLNRNEYEINENNQKIYFKDIFEKRVGIPLYSILSYKDDIQSMI
General information:
TITO was launched using:
RESULT:
Template:
4FYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29804 for 1068 contacts (-27.9/contact) +
2D Compatibility (PS) -15946 + (NN) -4439 + (LL) 352
1D Compatibility (HY) -10400 + (ID) 1200
Total energy: -61437.0 ( -57.53 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_4FYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYM-query.scw
PDB file :
Tito_Scwrl_4FYM.pdb
: