Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | GALTAQGASFFTAAPLSYNTGNSTISLDYRSPQLRVSGGALALTSPVFVYQTPFNTPMRLRNGTYNEYADAHIQMVRF--GTTVLFNIDVTGETNATGTQTWELQFDGTLGSCLTGRMQVMGGTGEELDVTPTFILPTSDKSVYKQGFMPIVCSENGEFKQSTYCSYALTYRLGNFYITLKSTTSGCKPIFQMSFMYESQIGIV |
1IM3 Chain:D ((1-95)) | ----------------------PWFQIE--DNRCYIDNGKLFARGSIVGNMSRFVFDPKADYGGVGENLYVHADDVEFVPGESLKWNVRNLDVMPIFETLALRLVLQG----------DVI-----WLRCVPEL---------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1IM3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -40051 for 636 contacts (-63.0/contact) +
2D Compatibility (PS) -10091 + (NN) -2400 + (LL) 5520
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -52622.0 ( -82.74 by residue)
QMean score : 0.106
|
|
|