Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLNLSVDEVLTTTRSVRKRLDFDKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANARGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGREDESAVGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAYTQGIDFRPAKRLPAESVTHWNGW
4DN2 Chain:A ((21-206))
--QSMETLEAIRTRRSVRKFS--DRPVEPEKLRAVLDAARLAPSWANMQCWRFVVVEDQATKVQISELS------YVEAYFGPK--GYKSN-----------PAQKALAEAPVVIIACGEPPQSGELRGQQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVF----DEQQLGELLGIPA-ELRIVGLFPLGYPLEGPKAGPSRKPLDEIVHYGKY
General information:
TITO was launched using:
RESULT:
Template:
4DN2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105395 for 1388 contacts (-75.9/contact) +
2D Compatibility (PS) -20726 + (NN) -17173 + (LL) 1256
1D Compatibility (HY) -8400 + (ID) 2650
Total energy: -153088.0 ( -110.29 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_4DN2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DN2-query.scw
PDB file :
Tito_Scwrl_4DN2.pdb
: