Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGP---VAGNYVHDFTANGTSSSFYTIAGNLSTS--KGTATYNGKTLTQCLKMETATSISFTAPSAGKLTLVFAEAAATAKVDGNKVTASNGIITVDLAQGAHTITKADACNLFYMEYAAHHHHHH
1IM3 Chain:D ((1-95))
--PWFQIEDNRCYI--DNGKLFARGSIVGNMSRFVFDPKADYGG--VGENLYVH-ADDVEFVPGESLKWNVRNLDVMPIFETLALRLVLQGDVIWLRCVPEL------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8837 for 597 contacts (-14.8/contact) +
2D Compatibility (PS) -9571 + (NN) -928 + (LL) 2348
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -21788.0 ( -36.50 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: