Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYL------YDTKEENGKIISKVV-----------FLQENGLLNKQVRYEFQYNENGKVSE-KKAFRWDRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS---
2RER Chain:A ((1-155))
MAARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTEMRWVQEFDM--KPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQRTP
General information:
TITO was launched using:
RESULT:
Template:
2RER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10823 for 882 contacts (-12.3/contact) +
2D Compatibility (PS) -13958 + (NN) 881 + (LL) -152
1D Compatibility (HY) 1200 + (ID) 400
Total energy: -23252.0 ( -26.36 by residue)
QMean score : 0.193
(partial model without unconserved sides chains):
PDB file :
Tito_2RER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RER-query.scw
PDB file :
Tito_Scwrl_2RER.pdb
: