Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MHREPAKKKAEKRLFDASSFGKDLLAGGV--AAAVSKTAVAP-----IERVKLLLQVQASSKQISPEARYK--GMVDCLVRI------PREQGFFSFWRGNLANVIRYFPTQALNFAFKDKYK-----------QLFMSGVNKEKQFWRWFLANLASGGAAGATSLCV-----VYPLDFARTRLGV-DIGKGPEE--RQFKGLGDCIMKIAKSDGIAGLYQGFGVSVQGII---VYRASYFGAYDTVKGLLPKPKKTPFLVSF-----FIAQVVTTCSGILSYPFDTVRRRMMMQSGEAKRQYKGTLDCFVKIYQHEGISSFFRGAFSNVLRGT-------GGALVLVLYDKIKEFFHIDIGGR----- |
| 1CJD Chain:A ((15-383)) | LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPN--VDFVVQYANLYRYLSTIAVFDNG-GSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109928 for 2315 contacts (-47.5/contact) +
2D Compatibility (PS) -32150 + (NN) 5855 + (LL) 332
1D Compatibility (HY) 0 + (ID) 2250
Total energy: -138141.0 ( -59.67 by residue)
QMean score : 0.081
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