Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MVGYDPKPDGRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDV-LRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYEFFCNVFHCMNRTASQR |
| 2Y8V Chain:A ((8-287)) | PEHRRVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNE---DPGHITLNDDPPDHEMYNPLWAEVPVLKRSG----------VKVMGMLGGAAQ-GSYRCLDG--------DQEKFERYY--QPLLAMVRRHQLDGLDLDVEEEMSLPGIIRLIDRLKLDLG--------DDFIITLAPVAAALLGIGNLSGFDYRQLEQQRGSKI--------SWYNAQFYNGWGLAEDPRMYAAIVAQ------GWSPQRVVYGLLTNPGNGSQGYVPRERIGPVLAVLVEQFPNFGGVMGWEYFNSIPGEQQSPWQWAAEMSLSMH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y8V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122917 for 2177 contacts (-56.5/contact) +
2D Compatibility (PS) -27854 + (NN) -3692 + (LL) 2528
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -161085.0 ( -73.99 by residue)
QMean score : 0.110
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