Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKNSLYIISSLFFACVLFVYATATNFQNSTSARQVKTETYTNTVTNVPIDIRYNSDKYFISG-FASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGVGTIEVPLSIEDLPNGLT-AVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKIIAVLPTSERITGNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN |
| 3LYW Chain:A ((3-85)) | ------------------------------------------PTL-TLSLIAKNTPANSMIMTKLPS-VRVKTEGYNPS-I------NVNELFAYVDLSGSEPGEHDYEVKV-EPIPNIKIVEISPRVVTLQLEH------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LYW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30224 for 485 contacts (-62.3/contact) +
2D Compatibility (PS) -8697 + (NN) -1557 + (LL) 11308
1D Compatibility (HY) 1200 + (ID) 300
Total energy: -28270.0 ( -58.29 by residue)
QMean score : 0.046
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