Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKL------LLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS---FWRGNLANVIRYF------PTQA----LNFAFKDKYKQLFL------GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV------GKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIF----VSWMIAQSVTAVAGLVSYPFDTVR----RRMMMQ--------SGRKGADIMYTGTV------------DCWRKIAKDEGAKAFFKGAWSNVLRG-------MGGAFVLVLYDEIKKYV------------ |
| 1CJD Chain:A ((15-383)) | -LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIV--KGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAV-GANPLEAIYQGAGAAD---CEFEEISYTVYQSYLDQLPVGQNGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122923 for 2023 contacts (-60.8/contact) +
2D Compatibility (PS) -30296 + (NN) 3844 + (LL) 740
1D Compatibility (HY) -7600 + (ID) 2950
Total energy: -159185.0 ( -78.69 by residue)
QMean score : 0.107
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