Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMRVYSLLFMMLFALSIGANAQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVENISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEKSKMGYNFETKQYEKAVL-------LKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEMQVF |
3AML Chain:A ((66-131)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATIYREWAPA--AQEAQLIGEFNNWN-GAKHKMEK-DKFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGG------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3AML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -26262 for 342 contacts (-76.8/contact) +
2D Compatibility (PS) -6554 + (NN) -1729 + (LL) 21208
1D Compatibility (HY) 1600 + (ID) 500
Total energy: -12237.0 ( -35.78 by residue)
QMean score : 0.038
|
|
|