Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLLLVFLSLTWLSASAQALVPITWTAYGLTFEAPKGILVEEDTEETFLL----NNSRFYITIQSLD-SDGMTKSDLK-SVLKDYA-NDDGVKDQSAVQEFELPQFFGTYLKGSCETDH-CLYA--CLMTKAAGSGFYISIIYSKENEN------IAEKILKSFTMEE
1TU1 Chain:A ((5-142))
-------------------------LYRLHEADLEIPDAWQD--QSINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLHK-RWDINIHGHAAVLLDYQWQREGRDLMLRQVFIER-RPAV-LI-TTLTTTPADLPHHEPAWKQAMQTLVPR-
General information:
TITO was launched using:
RESULT:
Template:
1TU1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48877 for 699 contacts (-69.9/contact) +
2D Compatibility (PS) -13445 + (NN) -5343 + (LL) 3720
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -66545.0 ( -95.20 by residue)
QMean score : 0.232
(partial model without unconserved sides chains):
PDB file :
Tito_1TU1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TU1-query.scw
PDB file :
Tito_Scwrl_1TU1.pdb
: