Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVF---T------DVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEM-------------CDKVQISDSH----------LKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFT-GQAVELFDEEF-RHLYASSKPVMGLKSP
1V0W Chain:A ((314-496))
-------------------PEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYDALAAKM-AAGVKVRIVVSDPANR-----GYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN-GKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSW---LQDFGYIVESPEAAKQLDAKLLDPQWKYSQETAT----
General information:
TITO was launched using:
RESULT:
Template:
1V0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103443 for 1020 contacts (-101.4/contact) +
2D Compatibility (PS) -15802 + (NN) -8663 + (LL) 2160
1D Compatibility (HY) -400 + (ID) 750
Total energy: -126898.0 ( -124.41 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1V0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V0W-query.scw
PDB file :
Tito_Scwrl_1V0W.pdb
: