Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKILGLLGLALAAAFVLTACGQKNDKNTLTVGVMTMTDSDKERWDKIEELLKKENIKLKFKEFTDYSQPNKALKNGEIDINSFQHYNFLNNWNKENKGDLVTVAETYISPINLFSGTENGKAKYSSAKEIPNGGQIAIPNDATNESRALYVLQDAGLIKLNVSGDELATVKNIKSNPKNLDIKEVDASQTARNLASVDAAVVNNSYAVPAKIDF-KTSL-YKEKVNEGSKQWINIIAAQKNWKKSKKAAAIKKLIKAYHTDAVKKVIKKTAKGVDEPVW |
4IB2 Chain:A ((6-246)) | ------------------------SSEDAKTIKVAASATPHA--EILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDIHYEPFGIYPGTKK------SLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEENPYNVEIVELEAAQVARVTGETAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTYVNIIAVKEGNEKEEK---IQALVKALKSDEIKEYIEKTYDG------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IB2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14467 for 2004 contacts (-7.2/contact) +
2D Compatibility (PS) -25269 + (NN) -8225 + (LL) 3484
1D Compatibility (HY) -17600 + (ID) 4500
Total energy: -66577.0 ( -33.22 by residue)
QMean score : 0.390
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