Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEETNITGVTVPDSVISIGRLAFAYCNSLSDVKLSENLI------YINELAFASCDALKEITIPASVEKMDNPFRWSNALDTVYMEGMVAPE
4FDW Chain:A ((237-312))
----------------------------------------------------------------------------VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIR------------------------
General information:
TITO was launched using:
RESULT:
Template:
4FDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62738 for 475 contacts (-132.1/contact) +
2D Compatibility (PS) -7021 + (NN) 2129 + (LL) 6820
1D Compatibility (HY) -7200 + (ID) 1200
Total energy: -69210.0 ( -145.71 by residue)
QMean score : 0.136
(partial model without unconserved sides chains):
PDB file :
Tito_4FDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FDW-query.scw
PDB file :
Tito_Scwrl_4FDW.pdb
: