Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNSRRDFLKKGALAGFSALMIPEIAKAAVKENTSVHAPKINLKKDCVILFQGDSITDCGRDRNSNRCNTMEQFGSGYVLFTATQLLEGKAALQPKIYNRGISGNKVYQLRERWEIDCLAFQPDVLSILIGVNDYWHTL-------THGYKGTVETYENDLRALLKYTKEKLPNTQIVLCEPFTLRDGAAIEDSKWYPMFDEFRKSARKLSEEFNTIFVPFQSGFDAAVK-LAPARYWSNDGVHPDLPGRQLMANMWMEATGLK
4JHL Chain:A ((9-214))
------------------------------------------------LLFIGDSITDCGRARPEGE-GSFGALGTGYVAYVVGLLQAVYPELGIRVVNKGISGNTVRDLKARWEEDVIAQKPDWVSIMIGINDVWRQYDLPFMKEKHVY---LDEYEATLRSLVLETKPLVKG--IILMTPFYIEGN---EQDPMRRTMDQYGRVVKQIAEETNSLFVDTQAAFNEVLKTLYPAAL-AWDRVHPSVAGHMILARAFLREIGFE
General information:
TITO was launched using:
RESULT:
Template:
4JHL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109346 for 1676 contacts (-65.2/contact) +
2D Compatibility (PS) -21553 + (NN) -8741 + (LL) 4372
1D Compatibility (HY) -19600 + (ID) 3650
Total energy: -158518.0 ( -94.58 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_4JHL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JHL-query.scw
PDB file :
Tito_Scwrl_4JHL.pdb
: